I have a dual monitor setup under Ubuntu 16.04.1. After I updated a few days ago, the workspace switcher buttons (Ctrl-Alt-Arrows Keys) do not work anymore and each time I open a new window, it gets placed under the launcher and the top menu (see screenshot), instead of a next to those. Also, if I click on any of the launcher icons that indicate an active window, the workspace does not change anymore to the workspace where this window is placed. It does bring up the window if I am already in the correct workspace, though.
I do not know if there is a way to find out which packages were changed between 09/28/2016 and 09/29/2016, but I suspect it has to do with those, since I never had that problem before.
Also, I am not sure if unity is the right package or xorg to report as the source of the problem.
P.S.: here is an image that shows the problem:
Also I created a bug where all the apport information is attached: launchpad.