What does it do?
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The Ayatana Project is the collective project that houses user interface, design and interaction projects started by Canonical.
For example they have designed:
* Application Indicators
* The Me Menu
* Messaging Menu
* Notify OSD
* Unity
More information: https://launchpad.net/ayatana

Andres
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even more info: https://wiki.ubuntu.com/Ayatana/ – Rafał Cieślak Feb 17 '11 at 20:36