I have some themes installed on ubuntu 16.04 right now and im running plank as well, i wanted to know if i could safely just update to 18 right now or would i have to restore defaults and uninstall any extra features
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You need to add a little more information, is your /home folder on a partition that won't be formatted? What do you mean by theme, gnome theme?
I assume this is the case. I use Vertex theme for my system. I updated from 17.10 to 18.04 today (I've had the same home partition since 14.04) and this worked just fine. This is what I did:
- Installed Ubuntu
/
over my old partition and chose to mount my existing/home
as usual - Once installed I ran the instructions for my theme described in the github link above
- Then I rebooted, without making any changes to theme or system settings.
Once it booted again my themes were automatically selected and active. I don't use plank however, but I assume if you install it and don't change any settings then it will come back as it was after a reboot, so long as you don't add new favourites to your unity bar or make too many system changes.

Noki
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.skype
folder in your home drive(or whatever the app name is). Use CTRL+H to reveal hidden folders. You could backup the configs to the apps you want to keep on a usb stick just in case. These can live in multiple places, like.local
so look up each app you want to backup and find it's corresponding files. – Noki May 01 '18 at 11:56