I just upgrade to 18.10 from 18.04 and the dock is always hidden. I tried to modify the 'Auto-hide the dock' in Settings, but nothing works. I also tried to change the position (from left to bottom) and this also does not work.
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Restarting Session worked for me (Ubuntu 18.10.) In my case I added a second monitor, and dock setup stopped responding.

MeSo2
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What does restarting session mean? I have exactly the same (always auto hide, position cannot be changed). I've logged in/out many times, but this doesn't go away. – Jan Wielemaker Jun 30 '19 at 15:14
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I do not remember the exact in-and-outs of the issue, but restarting a session would be to logout and log back in. – MeSo2 Jul 01 '19 at 21:03
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Ah. That works! This is a home machine that is always logged in and only rebooted after security updates. Reboot doesn't help. Logout and back in does. Thanks! – Jan Wielemaker Jul 03 '19 at 06:56
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Dash to Dock
GNOME extension installed? – heynnema Oct 24 '18 at 21:56