bcl2fastq2 library installation error

Question

Image of message i get when trying to install bcl2fastq2 library to use with the Cellranger 3.0.1 software

So I already installed all dependencies and checked them in terminal, but still while trying to install bcl2fast i get this, and i can't figure out what and hot toconfigure to make it install. In image it says in russian "make file not found. Help me please!

I tried to use script from here to install bcl2fast.

I use Ubuntu 18.04 and my computer meets min sysreq for this software!

Thank you further for your help, will wait for any information that can help!

Welcome to Ask Ubuntu! Please don't post pictures of text. Instead, copy the text, [edit] it into your post, and use the formatting tools like code formatting to make it look nice. To get command line output in English, see instructions here. It's also important to include the exact command you ran to get that output. — wjandrea, Dec 15 '18 at 17:19

score 1 · Answer 1 · edited Apr 03 '19 at 14:06

1

After spending a couple of hours trying everything...

I solved the issue in Ubuntu 18 downloading the .rpm package from here: bcl2fastq2 Conversion Software v2.20 download

Then converting to a .deb package and installing:

sudo alien bcl2fastq2-v2.20.0.422-Linux-x86_64.rpm
sudo dpkg -i bcl2fastq2_0v2.20.0.422-2_amd64.deb

edited Apr 03 '19 at 14:06

Jeff

1,674

answered Apr 03 '19 at 11:57

Oligoelemento

11

bcl2fastq2 library installation error

1 Answers1