My comment would be too long.
If BOOTMGR was missing, that means that you probably installed/partitioned on top of where your boot records reside (usually on primary partition for Windows). You can do Bootrec.exe from Windows Recovery Command line (to get Windows working).
If you are unfamiliar with how partitions work, you can either read about 'Gparted', or you can create a partition in Windows for Ubuntu prior to installing using this link, or How do I install Ubuntu?
Note: You will also want to make a swap partition (this is used to 'swap' data from memory (RAM) to disk). Windows does this in a form of a swap file/page file. which for both operating systems is usually at least double diskspace to RAM size. I.E. 1MB RAM = 2MB Hard disk space.
You may also want to read about Dual Booting, which will also help explain somewhat how to do this.
You want to make sure that GRUB (the default bootloader for Ubuntu 12.04) is able to control your booting, as well as preserving the Windows bootloader as well. This is done by GRUB handling initial loading, then (after giving you an option to select Windows), will pass off to the Windows loader. Windows does not like other non-Windows operating systems so will at times overwrite other bootloaders, this is why you should install Windows first if you wish to have 2 systems. It is possible to do it in reverse, but often is more work. Windows 8 is worse in this manner, but enough of rant.