I found this on their website (seems to me that you can create a list of words into a text file and then can edit this file and the use this new filtered file again):
How can I delete all the spam (or non-spam) tokens?
Bogoutil lets you dump a wordlist and load the tokens into a new wordlist. With the added use of awk and grep, counts can be zeroed and tokens with zero counts for both spam and non-spam can be deleted.
The following commands will delete the tokens from spam messages:
bogoutil -d wordlist.db | \
awk '{print $1 " " $2 " 0"}' | grep -v " 0 0" | \
bogoutil -l wordlist.new.db
The following commands will delete the tokens from non-spam messages:
bogoutil -d wordlist.db | \
awk '{print $1 " 0 " $3}' | grep -v " 0 0" | \
bogoutil -l wordlist.new.db
Regarding
Uninstalling bogofilter seem to uninstall the program but not the "learned data".
You probably need to "purge" the application. In general user created files and settings are not removed when deleting software. See What is the correct way to completely remove an application? for a bit on information on that.