I recently downloaded 16.04 onto a CD, but system will not boot from CD as WUBI is not present in download. Any ideas as to how to correct this?
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Wubi is not necessary to boot from CD. But there are community supported versions if you need Wubi. see Wubi info – ngng May 17 '16 at 19:19
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I read somewhere a while back that it was a choice by the Ubuntu devs. Nothing you can do about it.
From the looks of it, Ubuntu 15.04 is the last ISO that comes with Wubi, but fortunately we'll get a better tool in the future.

You'reAGitForNotUsingGit
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1For Ubuntu 16.04 and Higher, Use Wubi by Hakuna Matata To Install Wubi on Windows Laptop/Computers without using a USB Stick.
Wubi Hakuna Matata download from the wiki: [https://github.com/hakuna-m/wubiuefi/wiki]
If you want to do other Linux OS, you can use Unetbootin or Rufus
– PythonWubiUser Sep 06 '16 at 01:39