I'm installing Ubuntu 16.04 onto an external HDD (sdb). My computer also has an internal Windows 10 HDD (sda).
When at the partitioning stage, I chose for the boot loader to be installed onto the external HDD (sdb).
When Uniquity is installing the system, it mounts Windows 10's ESP (sda2) and copies the Ubuntu/grub boot loaders over, when it should have mounted the ESP created on the external HDD (sdb1). /dev/sda2 is the Win10 ESP and it's mounted to /target/boot/efi. /dev/sdb1 is the correct ESP but is not touched.
Because the boot information is not on the external HDD, the Windows 10 disk must be present to boot Ubuntu because the boot information pointing to Ubuntu is located on the Windows ESP - not exactly optimal.
The question is can I force Ubiquity to use sdb1 as the ESP. It makes sense to by default because it's where I chose to install grub but apparently not.
Ubiquity is version 2.21.63. I'm revisiting this issue because I need Ubuntu on this computer. I filed a bug report originally but it is still undecided/unassigned.