I've been having this happen for a while - not too sure what caused it.
There's one or two processes (here /usr/sbin/aptd
) that always spike up to 98-100% CPU usage, and I'm not sure how to solve this.
Would someone mind clarifying what the issue is, and if uninstalling Python 2.7 (and dependencies, i.e. Python 3, etc.) would help?
Thanks.
Edit: sudo apt-get update
gives me the following errors:
david@david-Blade:~$ sudo apt-get upgrade
E: Could not get lock /var/lib/dpkg/lock - open (11: Resource temporarily unavailable)
E: Unable to lock the administration directory (/var/lib/dpkg/), is another process using it?
david@david-Blade:~$ sudo apt-get -y update
E: Could not get lock /var/lib/apt/lists/lock - open (11: Resource temporarily unavailable)
E: Unable to lock directory /var/lib/apt/lists/
E: Could not get lock /var/lib/dpkg/lock - open (11: Resource temporarily unavailable)
E: Unable to lock the administration directory (/var/lib/dpkg/), is another process using it?
Update 1:
Tried running sudo killall -9 apt-get
and sudo kill -9 _pid_
as per instructions here and it appears that I'm unable to do so? Consequently, dpkg is blocked by another process and I can't run sudo dpkg-reconfigure -phigh -a
or sudo dpkg --configure -a
.
david@david-Blade:~$ sudo killall -9 apt-get
apt-get: no process found
david@david-Blade:~$ sudo kill -9 _pid_
kill: failed to parse argument: '_pid_'
Update 2:
Ran 'sudo dkpg --configure -a' and disabled my UEFI booter. Running sudo apt-get update
gives me the following error log:
david@david-Blade:~$ sudo apt-get upgrade
Reading package lists... Done
Building dependency tree
Reading state information... Done
Calculating upgrade... Done
The following packages were automatically installed and are no longer required:
bsdtar libgsoap8 libmuparser2v5 libqt4-opengl libvncserver1 linux-image-extra-4.4.0-31-generic
linux-image-extra-4.4.0-42-generic linux-signed-image-4.4.0-42-generic linux-tools-4.4.0-42
linux-tools-4.4.0-42-generic python3-blinker python3-cffi-backend python3-cryptography python3-dateutil
python3-idna python3-jwt python3-oauthlib python3-requests-oauthlib python3-tz ruby-childprocess ruby-domain-name
ruby-erubis ruby-ffi ruby-http-cookie ruby-i18n ruby-listen ruby-log4r ruby-mime-types ruby-net-scp ruby-net-sftp
ruby-net-ssh ruby-netrc ruby-nokogiri ruby-rb-inotify ruby-rest-client ruby-sqlite3 ruby-unf ruby-unf-ext sqlite3
thunderbird-locale-en thunderbird-locale-en-gb thunderbird-locale-en-us virtualbox-dkms
Use 'sudo apt autoremove' to remove them.
The following packages will be upgraded:
apparmor base-files distro-info-data dkms gnome-software gnome-software-common google-chrome-stable im-config
initramfs-tools initramfs-tools-bin initramfs-tools-core language-pack-en language-pack-gnome-en libapparmor-perl
libapparmor1 libc-bin libc-dev-bin libc6 libc6:i386 libc6-dbg libc6-dev libc6-i386 libqt5core5a libqt5dbus5
libqt5gui5 libqt5network5 libqt5opengl5 libqt5printsupport5 libqt5sql5 libqt5sql5-sqlite libqt5widgets5 libqt5xml5
libwhoopsie0 locales macbuntu-os-icons-lts-v7 macbuntu-os-ithemes-lts-v7 multiarch-support python3-distupgrade
python3-update-manager r-base r-base-core r-base-dev r-base-html r-cran-cluster r-cran-codetools r-doc-html
r-recommended snapd ubuntu-release-upgrader-core ubuntu-release-upgrader-gtk unattended-upgrades update-manager
update-manager-core update-notifier update-notifier-common virtualbox-5.1 whoopsie
57 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Need to get 192 MB of archives.
After this operation, 865 kB of additional disk space will be used.
Do you want to continue? [Y/n] Y
Err:1 http://dl.google.com/linux/chrome/deb stable/main amd64 google-chrome-stable amd64 54.0.2840.90-1
404 Not Found [IP: 2607:f8b0:4009:812::200e 80]
Get:2 http://cran.rstudio.com/bin/linux/ubuntu xenial/ r-base-core 3.3.2-1xenial0 [21.0 MB]
Ign:3 http://ppa.launchpad.net/noobslab/macbuntu/ubuntu xenial/main i386 macbuntu-os-icons-lts-v7 all 3.18.7~xenial~NoobsLab.com
Get:4 http://ca.archive.ubuntu.com/ubuntu xenial-updates/main amd64 base-files amd64 9.4ubuntu4.3 [67.7 kB]
Ign:5 http://ppa.launchpad.net/noobslab/macbuntu/ubuntu xenial/main i386 macbuntu-os-ithemes-lts-v7 all 3.18.7~xenial~NoobsLab.com
Err:3 http://ppa.launchpad.net/noobslab/macbuntu/ubuntu xenial/main i386 macbuntu-os-icons-lts-v7 all 3.18.7~xenial~NoobsLab.com
404 Not Found
Err:5 http://ppa.launchpad.net/noobslab/macbuntu/ubuntu xenial/main i386 macbuntu-os-ithemes-lts-v7 all 3.18.7~xenial~NoobsLab.com
404 Not Found
Get:6 http://download.virtualbox.org/virtualbox/debian xenial/contrib amd64 virtualbox-5.1 amd64 5.1.8-111374~Ubuntu~xenial [65.2 MB]
Err:7 http://ca.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libc6-i386 amd64 2.23-0ubuntu4
404 Not Found [IP: 2001:67c:1360:8001::21 80]
Err:8 http://ca.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libc6-dev amd64 2.23-0ubuntu4
404 Not Found [IP: 2001:67c:1360:8001::21 80]
Err:9 http://ca.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libc-dev-bin amd64 2.23-0ubuntu4
404 Not Found [IP: 2001:67c:1360:8001::21 80]
Err:10 http://ca.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libc6-dbg amd64 2.23-0ubuntu4
404 Not Found [IP: 2001:67c:1360:8001::21 80]
Err:11 http://ca.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libc6 amd64 2.23-0ubuntu4
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Err:12 http://ca.archive.ubuntu.com/ubuntu xenial-updates/main i386 libc6 i386 2.23-0ubuntu4
404 Not Found [IP: 2001:67c:1360:8001::21 80]
Ign:13 http://ca.archive.ubuntu.com/ubuntu xenial-updates/main i386 locales all 2.23-0ubuntu4
Err:14 http://ca.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libc-bin amd64 2.23-0ubuntu4
404 Not Found [IP: 2001:67c:1360:8001::21 80]
Get:15 http://ca.archive.ubuntu.com/ubuntu xenial-updates/main amd64 language-pack-en all 1:16.04+20161009 [145 kB]
Get:16 http://ca.archive.ubuntu.com/ubuntu xenial-updates/main amd64 language-pack-gnome-en all 1:16.04+20161009 [169 kB]
Ign:17 http://ca.archive.ubuntu.com/ubuntu xenial-updates/main i386 ubuntu-release-upgrader-gtk all 1:16.04.17
Ign:18 http://ca.archive.ubuntu.com/ubuntu xenial-updates/main i386 ubuntu-release-upgrader-core all 1:16.04.17
Ign:19 http://ca.archive.ubuntu.com/ubuntu xenial-updates/main i386 python3-distupgrade all 1:16.04.17
Get:20 http://ca.archive.ubuntu.com/ubuntu xenial-updates/main amd64 update-manager all 1:16.04.4 [543 kB]
Get:21 http://cran.rstudio.com/bin/linux/ubuntu xenial/ r-cran-cluster 2.0.5-1xenial0 [490 kB]
Get:22 http://cran.rstudio.com/bin/linux/ubuntu xenial/ r-cran-codetools 0.2-15-1cran1xenial0 [45.0 kB]
Get:23 http://cran.rstudio.com/bin/linux/ubuntu xenial/ r-base 3.3.2-1xenial0 [40.4 kB]
Get:24 http://cran.rstudio.com/bin/linux/ubuntu xenial/ r-recommended 3.3.2-1xenial0 [2,708 B]
Get:25 http://cran.rstudio.com/bin/linux/ubuntu xenial/ r-base-dev 3.3.2-1xenial0 [4,306 B]
Get:26 http://cran.rstudio.com/bin/linux/ubuntu xenial/ r-doc-html 3.3.2-1xenial0 [547 kB]
Get:27 http://cran.rstudio.com/bin/linux/ubuntu xenial/ r-base-html 3.3.2-1xenial0 [85.7 kB]
Get:28 http://ca.archive.ubuntu.com/ubuntu xenial-updates/main amd64 update-manager-core all 1:16.04.4 [5,332 B]
Get:29 http://ca.archive.ubuntu.com/ubuntu xenial-updates/main amd64 python3-update-manager all 1:16.04.4 [31.5 kB]
Get:30 http://ca.archive.ubuntu.com/ubuntu xenial-updates/main amd64 update-notifier amd64 3.168.2 [48.2 kB]
Get:31 http://ca.archive.ubuntu.com/ubuntu xenial-updates/main amd64 update-notifier-common all 3.168.2 [163 kB]
Get:32 http://ca.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libqt5core5a amd64 5.5.1+dfsg-16ubuntu7.2 [1,817 kB]
Get:33 http://ca.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libqt5dbus5 amd64 5.5.1+dfsg-16ubuntu7.2 [175 kB]
Get:34 http://ca.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libqt5network5 amd64 5.5.1+dfsg-16ubuntu7.2 [540 kB]
Get:35 http://ca.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libqt5gui5 amd64 5.5.1+dfsg-16ubuntu7.2 [2,287 kB]
Get:36 http://ca.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libqt5widgets5 amd64 5.5.1+dfsg-16ubuntu7.2 [2,253 kB]
Get:37 http://ca.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libqt5opengl5 amd64 5.5.1+dfsg-16ubuntu7.2 [128 kB]
Get:38 http://ca.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libqt5printsupport5 amd64 5.5.1+dfsg-16ubuntu7.2 [174 kB]
Get:39 http://ca.archive.ubuntu.com/ubuntu xenial-updates/main amd64 whoopsie amd64 0.2.52.2 [22.7 kB]
Get:40 http://ca.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libwhoopsie0 amd64 0.2.52.2 [9,898 B]
Get:41 http://ca.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libapparmor1 amd64 2.10.95-0ubuntu2.5 [31.6 kB]
Err:42 http://ca.archive.ubuntu.com/ubuntu xenial-updates/main amd64 multiarch-support amd64 2.23-0ubuntu4
404 Not Found [IP: 2001:67c:1360:8001::21 80]
Get:43 http://ca.archive.ubuntu.com/ubuntu xenial-updates/main amd64 distro-info-data all 0.28ubuntu0.2 [4,006 B]
Ign:44 http://ca.archive.ubuntu.com/ubuntu xenial-updates/main i386 initramfs-tools all 0.122ubuntu8.5
Ign:45 http://ca.archive.ubuntu.com/ubuntu xenial-updates/main i386 initramfs-tools-core all 0.122ubuntu8.5
Err:46 http://ca.archive.ubuntu.com/ubuntu xenial-updates/main amd64 initramfs-tools-bin amd64 0.122ubuntu8.5
404 Not Found [IP: 2001:67c:1360:8001::21 80]
Get:47 http://ca.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libapparmor-perl amd64 2.10.95-0ubuntu2.5 [31.4 kB]
Get:48 http://ca.archive.ubuntu.com/ubuntu xenial-updates/main amd64 apparmor amd64 2.10.95-0ubuntu2.5 [446 kB]
Get:49 http://ca.archive.ubuntu.com/ubuntu xenial-updates/main amd64 dkms all 2.2.0.3-2ubuntu11.3 [66.1 kB]
Err:50 http://ca.archive.ubuntu.com/ubuntu xenial-updates/main amd64 gnome-software amd64 3.20.1+git20160923.2.7374bdc-0ubuntu1~xenial1
404 Not Found [IP: 2001:67c:1360:8001::21 80]
Ign:51 http://ca.archive.ubuntu.com/ubuntu xenial-updates/main i386 gnome-software-common all 3.20.1+git20160923.2.7374bdc-0ubuntu1~xenial1
Ign:52 http://ca.archive.ubuntu.com/ubuntu xenial-updates/main i386 im-config all 0.29-1ubuntu12.2
Get:53 http://ca.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libqt5sql5 amd64 5.5.1+dfsg-16ubuntu7.2 [104 kB]
Get:54 http://ca.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libqt5sql5-sqlite amd64 5.5.1+dfsg-16ubuntu7.2 [33.1 kB]
Get:55 http://ca.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libqt5xml5 amd64 5.5.1+dfsg-16ubuntu7.2 [91.9 kB]
Err:56 http://ca.archive.ubuntu.com/ubuntu xenial-updates/main amd64 snapd amd64 2.16ubuntu3
404 Not Found [IP: 2001:67c:1360:8001::21 80]
Ign:57 http://ca.archive.ubuntu.com/ubuntu xenial-updates/main i386 unattended-upgrades all 0.90ubuntu0.1
Err:13 http://ca.archive.ubuntu.com/ubuntu xenial-updates/main i386 locales all 2.23-0ubuntu4
404 Not Found [IP: 2001:67c:1360:8001::21 80]
Err:17 http://ca.archive.ubuntu.com/ubuntu xenial-updates/main i386 ubuntu-release-upgrader-gtk all 1:16.04.17
404 Not Found [IP: 2001:67c:1360:8001::21 80]
Err:18 http://ca.archive.ubuntu.com/ubuntu xenial-updates/main i386 ubuntu-release-upgrader-core all 1:16.04.17
404 Not Found [IP: 2001:67c:1360:8001::21 80]
Err:19 http://ca.archive.ubuntu.com/ubuntu xenial-updates/main i386 python3-distupgrade all 1:16.04.17
404 Not Found [IP: 2001:67c:1360:8001::21 80]
Err:44 http://ca.archive.ubuntu.com/ubuntu xenial-updates/main i386 initramfs-tools all 0.122ubuntu8.5
404 Not Found [IP: 2001:67c:1360:8001::21 80]
Err:45 http://ca.archive.ubuntu.com/ubuntu xenial-updates/main i386 initramfs-tools-core all 0.122ubuntu8.5
404 Not Found [IP: 2001:67c:1360:8001::21 80]
Err:51 http://ca.archive.ubuntu.com/ubuntu xenial-updates/main i386 gnome-software-common all 3.20.1+git20160923.2.7374bdc-0ubuntu1~xenial1
404 Not Found [IP: 2001:67c:1360:8001::21 80]
Err:52 http://ca.archive.ubuntu.com/ubuntu xenial-updates/main i386 im-config all 0.29-1ubuntu12.2
404 Not Found [IP: 2001:67c:1360:8001::21 80]
Err:57 http://ca.archive.ubuntu.com/ubuntu xenial-updates/main i386 unattended-upgrades all 0.90ubuntu0.1
404 Not Found [IP: 2001:67c:1360:8001::21 80]
Fetched 96.9 MB in 12s (7,565 kB/s)
E: Failed to fetch http://ca.archive.ubuntu.com/ubuntu/pool/main/g/glibc/libc6-i386_2.23-0ubuntu4_amd64.deb 404 Not Found [IP: 2001:67c:1360:8001::21 80]
E: Failed to fetch http://ca.archive.ubuntu.com/ubuntu/pool/main/g/glibc/libc6-dev_2.23-0ubuntu4_amd64.deb 404 Not Found [IP: 2001:67c:1360:8001::21 80]
E: Failed to fetch http://ca.archive.ubuntu.com/ubuntu/pool/main/g/glibc/libc-dev-bin_2.23-0ubuntu4_amd64.deb 404 Not Found [IP: 2001:67c:1360:8001::21 80]
E: Failed to fetch http://ca.archive.ubuntu.com/ubuntu/pool/main/g/glibc/libc6-dbg_2.23-0ubuntu4_amd64.deb 404 Not Found [IP: 2001:67c:1360:8001::21 80]
E: Failed to fetch http://ca.archive.ubuntu.com/ubuntu/pool/main/g/glibc/libc6_2.23-0ubuntu4_amd64.deb 404 Not Found [IP: 2001:67c:1360:8001::21 80]
E: Failed to fetch http://ca.archive.ubuntu.com/ubuntu/pool/main/g/glibc/libc6_2.23-0ubuntu4_i386.deb 404 Not Found [IP: 2001:67c:1360:8001::21 80]
E: Failed to fetch http://ca.archive.ubuntu.com/ubuntu/pool/main/g/glibc/locales_2.23-0ubuntu4_all.deb 404 Not Found [IP: 2001:67c:1360:8001::21 80]
E: Failed to fetch http://ca.archive.ubuntu.com/ubuntu/pool/main/g/glibc/libc-bin_2.23-0ubuntu4_amd64.deb 404 Not Found [IP: 2001:67c:1360:8001::21 80]
E: Failed to fetch http://dl.google.com/linux/chrome/deb/pool/main/g/google-chrome-stable/google-chrome-stable_54.0.2840.90-1_amd64.deb 404 Not Found [IP: 2607:f8b0:4009:812::200e 80]
E: Failed to fetch http://ca.archive.ubuntu.com/ubuntu/pool/main/u/ubuntu-release-upgrader/ubuntu-release-upgrader-gtk_16.04.17_all.deb 404 Not Found [IP: 2001:67c:1360:8001::21 80]
E: Failed to fetch http://ca.archive.ubuntu.com/ubuntu/pool/main/u/ubuntu-release-upgrader/ubuntu-release-upgrader-core_16.04.17_all.deb 404 Not Found [IP: 2001:67c:1360:8001::21 80]
E: Failed to fetch http://ca.archive.ubuntu.com/ubuntu/pool/main/u/ubuntu-release-upgrader/python3-distupgrade_16.04.17_all.deb 404 Not Found [IP: 2001:67c:1360:8001::21 80]
E: Failed to fetch http://ca.archive.ubuntu.com/ubuntu/pool/main/g/glibc/multiarch-support_2.23-0ubuntu4_amd64.deb 404 Not Found [IP: 2001:67c:1360:8001::21 80]
E: Failed to fetch http://ca.archive.ubuntu.com/ubuntu/pool/main/i/initramfs-tools/initramfs-tools_0.122ubuntu8.5_all.deb 404 Not Found [IP: 2001:67c:1360:8001::21 80]
E: Failed to fetch http://ca.archive.ubuntu.com/ubuntu/pool/main/i/initramfs-tools/initramfs-tools-core_0.122ubuntu8.5_all.deb 404 Not Found [IP: 2001:67c:1360:8001::21 80]
E: Failed to fetch http://ca.archive.ubuntu.com/ubuntu/pool/main/i/initramfs-tools/initramfs-tools-bin_0.122ubuntu8.5_amd64.deb 404 Not Found [IP: 2001:67c:1360:8001::21 80]
E: Failed to fetch http://ca.archive.ubuntu.com/ubuntu/pool/main/g/gnome-software/gnome-software_3.20.1+git20160923.2.7374bdc-0ubuntu1~xenial1_amd64.deb 404 Not Found [IP: 2001:67c:1360:8001::21 80]
E: Failed to fetch http://ca.archive.ubuntu.com/ubuntu/pool/main/g/gnome-software/gnome-software-common_3.20.1+git20160923.2.7374bdc-0ubuntu1~xenial1_all.deb 404 Not Found [IP: 2001:67c:1360:8001::21 80]
E: Failed to fetch http://ca.archive.ubuntu.com/ubuntu/pool/main/i/im-config/im-config_0.29-1ubuntu12.2_all.deb 404 Not Found [IP: 2001:67c:1360:8001::21 80]
E: Failed to fetch http://ca.archive.ubuntu.com/ubuntu/pool/main/s/snapd/snapd_2.16ubuntu3_amd64.deb 404 Not Found [IP: 2001:67c:1360:8001::21 80]
E: Failed to fetch http://ca.archive.ubuntu.com/ubuntu/pool/main/u/unattended-upgrades/unattended-upgrades_0.90ubuntu0.1_all.deb 404 Not Found [IP: 2001:67c:1360:8001::21 80]
E: Failed to fetch http://ppa.launchpad.net/noobslab/macbuntu/ubuntu/pool/main/m/macbuntu-os-icons-lts-v7/macbuntu-os-icons-lts-v7_3.18.7~xenial~NoobsLab.com_all.deb 404 Not Found
E: Failed to fetch http://ppa.launchpad.net/noobslab/macbuntu/ubuntu/pool/main/m/macbuntu-os-ithemes-lts-v7/macbuntu-os-ithemes-lts-v7_3.18.7~xenial~NoobsLab.com_all.deb 404 Not Found
E: Unable to fetch some archives, try running apt-get update or apt-get --fix-missing.
apt
for example) are written in Python and will stop working if you break your Python installations. – Byte Commander Jan 02 '17 at 21:40/usr/sbin/aptd
scriipt, which is apt-daemon. Has something to do with your package management and automatic updates, I guess. Check the output ofsudo apt-get update
andsudo apt-get upgrade
for errors or warnings. – Byte Commander Jan 02 '17 at 22:02sudo killall aptd
? – Byte Commander Jan 02 '17 at 22:30sudo killall apt-get
(no process found). Same errors withsudo dpkg-reconfigure -phigh
andsudo dpkg --configure
. – wowdavers Jan 02 '17 at 22:48sudo dkpg --configure -a
and it seems like my UEFI Booter was the problem. I've disabled it for now, and I was able to run the command properly. After trying to runsudo apt-get update
, I get an error log (which I'll post shortly in my OP). – wowdavers Jan 02 '17 at 22:56sudo apt-get update
still gives me a few errors, but they're just archives that can't be fetched. This is even after I switch to the main Ubuntu repo. CPU usage across all tasks looking normal though. Thanks a lot for all the help! – wowdavers Jan 02 '17 at 23:11