In the following image there are two windows both out of focus which should look the same, but instead the back one has a more darker (higher contrast?) appearance.
- Back window: nautilus (gtk3)
- Front window: gufw (gtk2)
The only clue that I have found is that all the darker ones (windows with the problem) are made with gtk3.
Note that this happened the last month (from an auto update?), before that all windows looked like the front one.
Also note that this not a theme specific, all themes have the same problem.
System: Ubuntu 16.04, gnome-shell 3.18.5